NYS Medicaid FFS Laboratory Procedure Codes and Coverage Guidelines Manual
Page 24 of 51
Version 6/2024
81360 ZRSR2 (zinc finger CCCH-type, RNA binding motif and serine/arginine-rich 2) (e.g.,
myelodysplastic syndrome, acute myeloid leukemia) gene analysis, common variant(s)
(e.g., E65fs, E122fs, R448fs)
81400 Molecular pathology procedure, level 1 (e.g., identification of single germline variant
[e.g., SNP] by techniques such as restriction enzyme digestion or melt curve analysis)
81401 Molecular pathology procedure, Level 2 (e.g., 2-10 SNPs, 1 methylated variant, or 1
somatic variant [typically using nonsequencing target variant analysis], or detection of a
dynamic mutation disorder/triplet repeat)
81402 Molecular pathology procedure, Level 3 (e.g., >10 SNPs, 2-10 methylated variants, or 2-
10 somatic variants [typically using non-sequencing target variant analysis],
immunoglobulin and T-cell receptor gene rearrangements, duplication/deletion variants
1 exon, loss of heterozygosity [LOH], uniparental disomy [UPD])
81403 Molecular pathology procedure, Level 4 (e.g., analysis of single exon by DNA sequence
analysis, analysis of >10 amplicons using multiplex PCR in 2 or more independent
reactions, mutation scanning or duplication/deletion variants of 2-5 exons)
81404 Molecular pathology procedure, Level 5 (e.g., analysis of 2-5 exons by DNA sequence
analysis, mutation scanning or duplication/deletion variants of 6-10 exons, or
characterization of a dynamic mutation disorder/triplet repeat by Southern blot analysis)
81405 Molecular pathology procedure, Level 6 (e.g., analysis of 6-10 exons by DNA sequence
analysis, mutation scanning or duplication/deletion variants of 11-25 exons, regionally
targeted cytogenomic array analysis)
81406 Molecular pathology procedure, Level 7 (e.g., analysis of 11-25 exons by DNA
sequence analysis, mutation scanning or duplication/deletion variants of 26-50 exons,
cytogenomic array analysis for neoplasia)
81407 Molecular pathology procedure, Level 8 (e.g., analysis of 26-50 exons by DNA
sequence analysis, mutation scanning or duplication/deletion variants of >50 exons,
sequence analysis of multiple genes on one platform)
81408 Molecular pathology procedure, Level 9 (e.g., analysis of >50 exons in a single gene by
DNA sequence analysis)
81479 Unlisted molecular pathology procedure
81413 Cardiac ion channelopathies (e.g., Brugada syndrome, long QT syndrome, short QT
syndrome, catecholaminergic polymorphic ventricular tachycardia); genomic sequence
analysis panel, must include sequencing of at least 10 genes including ANK2, CASQ2,
CAV3, KCNE1, KCNE2, KCNH2, KCNJ2, KCNQ1, RYR2, and SCN5A
81414 duplication/deletion gene analysis panel, must include analysis of at least 2
genes, including KCNH2 and KCNQ1
81415 Exome (e.g., unexplained constitutional or heritable disorder or syndrome); sequence
analysis
81417 re-evaluation of previously obtained exome sequence (e.g., updated knowledge
or unrelated condition/ syndrome)
81420 Fetal chromosomal aneuploidy (e.g., trisomy21, monosomy X) genomic sequence
analysis panel, circulating cell-free fetal DNA in maternal blood, must include analysis of
chromosomes 13,18, and 21